Motifs

Abstract

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List of motifs

# SpeciesInteractionNetworks.motifs — Function.

motifs(::Type{Bipartite}, nodes::Integer)

Returns a list of bipartite motifs with the specified number of nodes. The list of motifs for each richness are from Simmons et al. (2018).

References

Simmons, Cirtwill, Baker, Wauchope, Dicks, Stouffer and Sutherland (2018)

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motifs(::Type{Unipartite}, nodes::Integer)

Returns a list of unipartite motifs with the specified number of nodes. The list of motifs for three species are from Stouffer et al. (2007).

References

Stouffer, Camacho, Jiang and Amaral (2007)

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Search for motifs

# SpeciesInteractionNetworks.findmotif — Function.

findmotif(M::SpeciesInteractionNetwork{<:Unipartite, <:Binary}, N::SpeciesInteractionNetwork{<:Unipartite, <:Binary})

Search for all groups of species in N that match the motif M – note that the motif to search is the first argument.

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